Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs80300312 chr12:5118719 G/A 2.77E-5 177 25.6 24.1 14.4 KM Plot
PCPG rs80306399 chr17:80516167 T/C 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs80317430 chr12:56727705 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs8032303 chr15:39737459 A/G 0.000428 178 25 25.67 26.33 KM Plot
PCPG rs80323293 chr17:1421084 G/A 1.64E-5 173 25.47 25.43 1.2 KM Plot
PCPG rs804230 chr17:3218752 C/A 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs804231 chr17:3220544 G/A 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs804240 chr17:3191613 A/G 1.17E-5 171 16.87 23.53 29.5 KM Plot
PCPG rs8043556 chr16:89580853 G/C 0.00022 177 26.78 25.53 19.2 KM Plot
PCPG rs8043557 chr16:89580856 G/A 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs8043881 chr16:89594731 C/T 0.000151 176 27.6 25.4 18.7 KM Plot
PCPG rs8043900 chr16:89581036 G/A 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs8045021 chr16:1735921 G/T 0 174 25.47 19.3 2.93 KM Plot
PCPG rs8046182 chr16:89581216 A/G 0.000236 177 26.78 25.53 19.3 KM Plot
PCPG rs8047180 chr16:1684327 C/T 0 178 2.93 26.65 25.17 KM Plot